IREScentralIRESG142 · De novo family 142
GraphClust IRESGRoute A · GraphClust de novo40 members
De novo family 142 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_soil_SRR11450579_k141_37563_flag1_multi515_len7677_5UTR_0 | nan | nan | 779 | 17.1 | — |
MT108489.1_5UTR_0 | nan | nan | 800 | 0.6 | — |
IMGVR_UViG_3300036416_000007 | Dicistroviridae | nan | — | — | — |
Supergroup015--picorna_wetland_SRR12234193_k141_19079_flag1_multi243_len8831_5UTR_0 | nan | nan | 881 | 996.7 | — |
Supergroup015--picorna_wetland_SRR12265900_k141_54112_flag1_multi401_len8795_5UTR_0 | nan | nan | 866 | 1000.7 | — |
IMGVR_UViG_3300038293_000029 | Dicistroviridae | nan | — | — | — |
Supergroup015--picorna_wetland_SRR12266272_k141_19004_flag1_multi90_len8825_5UTR_0 | nan | nan | 858 | 996.7 | — |
IMGVR_UViG_3300036121_000007 | Dicistroviridae | nan | — | — | — |
Showing 8 sample rows of 40 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 40 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle