IREScentralIRESG145 · De novo family 145
GraphClust IRESGRoute A · GraphClust de novo55 members
De novo family 145 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300021844_000249 | Hypoviridae | nan | — | — | — |
Supergroup015--picorna_freshwater_SRR6048938_k141_1696_flag1_multi708_len9861_5UTR_0 | Marnaviridae | Salisharnavirus | 918 | 530.4 | — |
IMGVR_UViG_3300038446_000249 | nan | nan | — | — | — |
Supergroup015--picorna_marine_SRR8820895_k99_25027_flag1_multi137_len9194_5UTR_0 | Marnaviridae | nan | 1132 | 52.7 | — |
Supergroup015--picorna_marine_sediment_SRR6808590_k141_175822_flag1_multi89_len8392_5UTR_0 | Marnaviridae | Salisharnavirus | 881 | 596.5 | — |
IMGVR_UViG_3300012524_000315 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_freshwater_SRR6048937_k141_111759_flag1_multi3148_len9856_5UTR_0 | Marnaviridae | Salisharnavirus | 921 | 530.4 | — |
IMGVR_UViG_3300012969_000199 | Marnaviridae | nan | — | — | — |
Showing 8 sample rows of 55 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 55 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle