IREScentralIRESG148 · De novo family 148
GraphClust IRESGRoute A · GraphClust de novo69 members
De novo family 148 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_act_sludge_SRR8554346_k141_35863_flag1_multi155_len8930_5UTR_0 | nan | nan | 897 | 602.4 | — |
Supergroup015--picorna_biofilm_SRR11414092_k141_35622_flag1_multi66_len8953_5UTR_0 | nan | nan | 911 | 602.4 | — |
Supergroup015--picorna_wastewater_ERR3463868_k99_57302_flag1_multi730_len5842_5UTR_0 | nan | nan | 471 | 193.8 | — |
Supergroup015--picorna_act_sludge_SRR6254353_k141_13524_flag1_multi100_len8961_5UTR_0 | nan | nan | 910 | 593.8 | — |
Supergroup015--picorna_act_sludge_SRR6960509_k141_52457_flag1_multi157_len6288_5UTR_0 | nan | nan | 919 | 593.1 | — |
IMGVR_UViG_3300006372_000065 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_act_sludge_SRR6255513_k141_39084_flag1_multi111_len8670_5UTR_0 | Marnaviridae | Locarnavirus | 621 | 596 | — |
IMGVR_UViG_3300006360_000182 | Marnaviridae | nan | — | — | — |
Showing 8 sample rows of 69 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 69 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle