IREScentralIRESG149 · De novo family 149
GraphClust IRESGRoute A · GraphClust de novo188 members
De novo family 149 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300012719_000279 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300046584_000212 | nan | nan | — | — | — |
ND_023990_5UTR_0 | Marnaviridae | nan | 735 | 132.7 | — |
IMGVR_UViG_3300010131_000360 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_wastewater_ERR3463866_k99_8267_flag1_multi1068_len9242_5UTR_0 | Marnaviridae | Locarnavirus | 786 | 100.1 | — |
Supergroup015--picorna_lake_water_SRR5839363_k141_23519_flag1_multi45_len8520_5UTR_0 | Marnaviridae | nan | 865 | 99.1 | — |
Supergroup015--picorna_freshwater_SRR12063580_k141_2726_flag1_multi18_len6818_5UTR_0 | Marnaviridae | nan | 895 | 29.3 | — |
Supergroup015--picorna_estuary_SRR7086596_k141_7018_flag1_multi23_len8564_5UTR_0 | Marnaviridae | nan | 787 | 80.3 | — |
Showing 8 sample rows of 188 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 188 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle