IREScentralIRESG150 · De novo family 150
GraphClust IRESGRoute A · GraphClust de novo41 members
De novo family 150 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300024484_000007 | nan | nan | — | — | — |
Supergroup015--picorna_riverine_SRR7687158_k141_156227_flag1_multi10_len9260_5UTR_0 | nan | nan | 846 | 609.7 | — |
IMGVR_UViG_3300024570_000005 | nan | nan | — | — | — |
IMGVR_UViG_3300024536_000016 | nan | nan | — | — | — |
Supergroup015--picorna_riverine_SRR7687267_k141_145803_flag1_multi12_len8859_5UTR_0 | nan | nan | 908 | 609.7 | — |
IMGVR_UViG_3300024867_000007 | nan | nan | — | — | — |
Supergroup015--picorna_houxin_aquatic_W16-DG_k141_28475_flag1_multi3535_len9428_5UTR_0 | nan | nan | 996 | 164.5 | — |
Supergroup015--picorna_riverine_SRR7687160_k141_22891_flag1_multi9_len7145_5UTR_0 | nan | nan | 911 | 609.7 | — |
Showing 8 sample rows of 41 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 41 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle