IREScentralIRESG154 · De novo family 154
GraphClust IRESGRoute A · GraphClust de novo29 members
De novo family 154 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300012743_000112 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300012700_000223 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300016692_000035 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_lake_water_SRR5834261_k141_26342_flag1_multi29_len9143_5UTR_0 | Marnaviridae | nan | 1013 | 618.2 | — |
IMGVR_UViG_3300012686_000048 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_lake_water_SRR5834166_k141_105661_flag1_multi35_len9125_5UTR_0 | Marnaviridae | nan | 1019 | 618.2 | — |
Supergroup015--picorna_lake_water_SRR5833977_k141_15009_flag1_multi23_len9154_5UTR_0 | Marnaviridae | nan | 1022 | 618.2 | — |
IMGVR_UViG_3300012689_000049 | Marnaviridae | nan | — | — | — |
Showing 8 sample rows of 29 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 29 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle