IREScentralIRESG157 · De novo family 157
GraphClust IRESGRoute A · GraphClust de novo151 members
De novo family 157 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300028851_000081 | nan | nan | — | — | — |
Supergroup015--picorna_act_sludge_SRR5466337_k141_29816_flag1_multi44_len9399_5UTR_0 | nan | nan | 1018 | 863.6 | — |
Supergroup015--picorna_act_sludge_SRR7976356_k141_56684_flag1_multi52_len8756_5UTR_0 | nan | nan | 832 | 22.1 | — |
Supergroup015--picorna_act_sludge_SRR8554348_k141_9325_flag1_multi17_len5365_5UTR_0 | nan | nan | 769 | 29.5 | — |
IMGVR_UViG_3300028850_000064 | nan | nan | — | — | — |
IMGVR_UViG_3300029838_000114 | nan | nan | — | — | — |
Supergroup015--picorna_act_sludge_SRR8554353_k141_27375_flag1_multi15_len5587_5UTR_0 | nan | nan | 737 | 29.5 | — |
Supergroup015--picorna_wastewater_ERR3463869_k119_43772_flag1_multi14_len8805_5UTR_0 | nan | nan | 693 | 47.4 | — |
Showing 8 sample rows of 151 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 151 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle