IREScentralIRESG158 · De novo family 158
GraphClust IRESGRoute A · GraphClust de novo29 members
De novo family 158 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_houxin_soil_S88-SH_k141_201324_flag1_multi185_len9208_5UTR_0 | Marnaviridae | Salisharnavirus | 889 | 400 | — |
Supergroup015--picorna_sediment_SRR11648440_k141_22051_flag1_multi31_len9244_5UTR_0 | Marnaviridae | Salisharnavirus | 914 | 69.4 | — |
IMGVR_UViG_3300037764_000058 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300035570_000007 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300037764_000155 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300037770_000029 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_houxin_soil_S88-SH_k141_21158_flag1_multi18_len9939_5UTR_0 | Marnaviridae | nan | 1122 | 92 | — |
IMGVR_UViG_3300035575_000126 | Marnaviridae | nan | — | — | — |
Showing 8 sample rows of 29 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 29 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle