IREScentralIRESG161 · De novo family 161
GraphClust IRESGRoute A · GraphClust de novo25 members
De novo family 161 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup031--Clstr018_riverine_SRR7687102_k141_121112_flag1_multi110_len7178_5UTR_0 | nan | nan | 1079 | 1000.7 | — |
Supergroup031--Clstr018_riverine_SRR7687100_k141_160979_flag1_multi73_len7176_5UTR_0 | nan | nan | 1084 | 1000.7 | — |
Supergroup031--Clstr018_riverine_SRR7687103_k141_41607_flag1_multi103_len7239_5UTR_0 | nan | nan | 1141 | 1000.7 | — |
IMGVR_UViG_3300024549_000549 | nan | nan | — | — | — |
Supergroup031--Clstr018_riverine_SRR8536149_k141_118732_flag1_multi61_len7220_5UTR_0 | nan | nan | 1122 | 1000.7 | — |
IMGVR_UViG_3300026415_000005 | nan | nan | — | — | — |
Supergroup031--Clstr018_riverine_SRR7687113_k141_78732_flag1_multi24_len7196_5UTR_0 | nan | nan | 1111 | 1000.7 | — |
IMGVR_UViG_3300024537_000106 | nan | nan | — | — | — |
Showing 8 sample rows of 25 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 25 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle