IREScentralIRESG163 · De novo family 163
GraphClust IRESGRoute A · GraphClust de novo18 members
De novo family 163 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_wastewater_ERR3463867_k99_90980_flag1_multi377_len8450_5UTR_0 | Marnaviridae | nan | 846 | 1001 | — |
Supergroup015--picorna_wastewater_ERR3463908_k119_48917_flag1_multi233_len8449_5UTR_0 | Marnaviridae | nan | 845 | 1001 | — |
Supergroup015--picorna_wastewater_ERR3463871_k119_87186_flag1_multi621_len8450_5UTR_0 | Marnaviridae | nan | 846 | 1001 | — |
Supergroup015--picorna_wastewater_ERR3463872_k119_14600_flag1_multi618_len8458_5UTR_0 | Marnaviridae | nan | 840 | 1001 | — |
Supergroup015--picorna_wastewater_ERR3463917_k119_51336_flag1_multi140_len8449_5UTR_0 | Marnaviridae | nan | 843 | 1001 | — |
Supergroup015--picorna_soil_SRR11450577_k141_41907_flag1_multi181_len6444_5UTR_0 | Marnaviridae | nan | 885 | 552.8 | — |
IMGVR_UViG_3300034653_000159 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_freshwater_SRR12063545_k141_3417_flag1_multi855_len8483_5UTR_0 | Marnaviridae | nan | 859 | 967.8 | — |
Showing 8 sample rows of 18 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 18 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle