IREScentralIRESG170 · De novo family 170
GraphClust IRESGRoute A · GraphClust de novo31 members
De novo family 170 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_soil_SRR5252567_k141_286715_flag1_multi15_len8604_5UTR_0 | nan | nan | 934 | 1013.1 | — |
Supergroup015--picorna_soil_SRR5252284_k141_46497_flag1_multi12_len8546_5UTR_0 | nan | nan | 881 | 1013.1 | — |
Supergroup015--picorna_soil_SRR5258656_k141_184559_flag1_multi16_len8920_5UTR_0 | nan | nan | 1191 | 1013.1 | — |
Supergroup015--picorna_soil_SRR5257969_k141_68803_flag1_multi20_len8924_5UTR_0 | nan | nan | 1191 | 1013.1 | — |
Supergroup015--picorna_soil_SRR5252352_k141_152074_flag1_multi10_len7713_5UTR_0 | nan | nan | 839 | 1013.1 | — |
Supergroup015--picorna_soil_SRR5258558_k141_29813_flag1_multi27_len8665_5UTR_0 | nan | nan | 932 | 1013.1 | — |
MN034880.1_5UTR_0 | nan | nan | 909 | 1013.1 | — |
Supergroup015--picorna_soil_SRR5252568_k141_264353_flag1_multi19_len10140_5UTR_0 | nan | nan | 946 | 1013.1 | — |
Showing 8 sample rows of 31 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 31 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle