IREScentralIRESG171 · De novo family 171
GraphClust IRESGRoute A · GraphClust de novo13 members
De novo family 171 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300002661_000020 | nan | nan | — | — | — |
Supergroup021--Clstr220_soil_SRR4022188_k141_34681_flag1_multi78_len5524_5UTR_0 | nan | nan | 914 | 607.9 | — |
Supergroup021--Clstr220_soil_SRR4021778_k141_13391_flag1_multi56_len5506_5UTR_0 | nan | nan | 916 | 607.9 | — |
IMGVR_UViG_3300036410_000042 | nan | nan | — | — | — |
IMGVR_UViG_3300003551_000021 | nan | nan | — | — | — |
IMGVR_UViG_3300002656_000021 | nan | nan | — | — | — |
Supergroup021--Clstr220_soil_SRR4021777_k141_320200_flag1_multi465_len5535_5UTR_0 | nan | nan | 919 | 607.9 | — |
IMGVR_UViG_3300002660_000007 | nan | nan | — | — | — |
Showing 8 sample rows of 13 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 13 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle