IREScentralIRESG175 · De novo family 175
GraphClust IRESGRoute A · GraphClust de novo37 members
De novo family 175 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_biofilm_SRR11414093_k141_53977_flag1_multi4279_len8149_5UTR_0 | nan | nan | 803 | 116.9 | — |
IMGVR_UViG_3300008884_000012 | nan | nan | — | — | — |
IMGVR_UViG_3300028723_000004 | nan | nan | — | — | — |
Supergroup015--picorna_act_sludge_SRR5466725_k141_38882_flag1_multi52_len7976_5UTR_0 | nan | nan | 843 | 899 | — |
IMGVR_UViG_3300029596_000010 | nan | nan | — | — | — |
IMGVR_UViG_3300028749_000002 | nan | nan | — | — | — |
Supergroup015--picorna_soil_SRR11450586_k141_91164_flag1_multi19_len8568_5UTR_0 | nan | nan | 796 | 32.3 | — |
IMGVR_UViG_3300006601_000063 | nan | nan | — | — | — |
Showing 8 sample rows of 37 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 37 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle