IREScentralIRESG177 · De novo family 177
GraphClust IRESGRoute A · GraphClust de novo16 members
De novo family 177 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_freshwater_SRR5079674_k99_6340_flag1_multi10_len8902_5UTR_0 | nan | nan | 440 | 500.8 | — |
Supergroup015--picorna_freshwater_SRR5079669_k99_36411_flag1_multi17_len8727_5UTR_0 | nan | nan | 1007 | 564.9 | — |
IMGVR_UViG_3300005419_000228 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_freshwater_SRR5079672_k99_12108_flag1_multi30_len9446_5UTR_0 | nan | nan | 1010 | 564.9 | — |
Supergroup015--picorna_freshwater_SRR8512518_k99_16636_flag1_multi660_len9452_5UTR_0 | nan | nan | 1044 | 506.6 | — |
IMGVR_UViG_3300007304_000035 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_freshwater_SRR6466487_k141_140853_flag1_multi26_len9507_5UTR_0 | nan | nan | 995 | 564.9 | — |
IMGVR_UViG_3300005565_000018 | Marnaviridae | nan | — | — | — |
Showing 8 sample rows of 16 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 16 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle