IREScentralIRESG178 · De novo family 178
GraphClust IRESGRoute A · GraphClust de novo20 members
De novo family 178 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300036541_000003 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300036287_000002 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_wetland_SRR12149670_k141_73003_flag1_multi935_len9582_5UTR_0 | Marnaviridae | nan | 918 | 613.7 | — |
IMGVR_UViG_3300035606_000062 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300039430_000081 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300035609_000036 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300035300_000259 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300036286_000002 | Marnaviridae | nan | — | — | — |
Showing 8 sample rows of 20 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 20 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle