IREScentralIRESG180 · De novo family 180
GraphClust IRESGRoute A · GraphClust de novo38 members
De novo family 180 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_estuary_SRR12391223_k141_46785_flag1_multi226_len9347_5UTR_0 | Marnaviridae | nan | 854 | 948.5 | — |
IMGVR_UViG_3300037666_000385 | nan | nan | — | — | — |
IMGVR_UViG_3300037647_000129 | nan | nan | — | — | — |
Supergroup015--picorna_estuary_SRR12391340_k141_15853_flag1_multi265_len9441_5UTR_0 | nan | nan | 878 | 948.5 | — |
IMGVR_UViG_3300037735_000262 | nan | nan | — | — | — |
IMGVR_UViG_3300037639_000143 | nan | nan | — | — | — |
IMGVR_UViG_3300009755_000280 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_estuary_SRR12391687_k141_13861_flag1_multi189_len9799_5UTR_0 | nan | nan | 1305 | 948.5 | — |
Showing 8 sample rows of 38 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 38 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle