IREScentralIRESG184 · De novo family 184
GraphClust IRESGRoute A · GraphClust de novo66 members
De novo family 184 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300028749_000009 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_act_sludge_SRR6960551_k141_74254_flag1_multi30_len8466_5UTR_0 | nan | nan | 948 | 593.7 | — |
Supergroup015--picorna_act_sludge_SRR5466337_k141_113700_flag1_multi153_len8507_5UTR_0 | nan | nan | 958 | 610 | — |
IMGVR_UViG_3300029670_000003 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_wastewater_ERR3463904_k99_98232_flag1_multi14_len8450_5UTR_0 | Marnaviridae | nan | 943 | 596 | — |
Supergroup015--picorna_wastewater_ERR3463866_k99_92750_flag1_multi15_len8069_5UTR_0 | Marnaviridae | nan | 561 | 596 | — |
Supergroup015--picorna_wastewater_ERR3463865_k99_29937_flag1_multi14_len7333_5UTR_0 | Marnaviridae | nan | 581 | 596 | — |
Supergroup015--picorna_wastewater_ERR3463864_k119_105773_flag1_multi16_len8081_5UTR_0 | nan | nan | 556 | 596 | — |
Showing 8 sample rows of 66 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 66 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle