IREScentralIRESG185 · De novo family 185
GraphClust IRESGRoute A · GraphClust de novo104 members
De novo family 185 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300004810_000060 | Marnaviridae | nan | — | — | — |
OM622341.1_5UTR_0 | nan | nan | 795 | 45.3 | — |
Supergroup015--picorna_freshwater_SRR10080824_k99_14420_flag1_multi116_len9096_5UTR_0 | Marnaviridae | nan | 986 | 60.3 | — |
Supergroup015--picorna_freshwater_SRR12063610_k141_7182_flag1_multi17_len8821_5UTR_0 | Marnaviridae | nan | 788 | 77.8 | — |
IMGVR_UViG_3300009586_000416 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300012522_000931 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300038289_000397 | nan | nan | — | — | — |
Supergroup015--picorna_estuary_SRR12391171_k141_2166_flag1_multi19_len5923_5UTR_0 | nan | nan | 617 | 603.2 | — |
Showing 8 sample rows of 104 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 104 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle