IREScentralIRESG187 · De novo family 187
GraphClust IRESGRoute A · GraphClust de novo28 members
De novo family 187 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
201MES1KKQQ14_2_k119_497749_122282 | unknown | unknown | 812 | 115.6 | — |
IMGVR_UViG_3300012969_000839 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_salt_marsh_SRR6824226_k141_92730_flag1_multi68_len8529_5UTR_0 | nan | nan | 1105 | 988.9 | — |
Supergroup015--picorna_freshwater_SRR5208542_k141_71037_flag1_multi130_len6966_5UTR_0 | nan | nan | 1185 | 969.5 | — |
Supergroup015--picorna_freshwater_SRR6049359_k141_115415_flag1_multi196_len6971_5UTR_0 | nan | nan | 1190 | 969.5 | — |
IMGVR_UViG_3300006419_000402 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300023706_000013 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300016748_000029 | Marnaviridae | nan | — | — | — |
Showing 8 sample rows of 28 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 28 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle