IREScentralIRESG188 · De novo family 188
GraphClust IRESGRoute A · GraphClust de novo31 members
De novo family 188 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300012373_000142 | nan | nan | — | — | — |
IMGVR_UViG_642973521_000001 | Mitoviridae | nan | — | — | — |
IMGVR_UViG_3300012395_000153 | nan | nan | — | — | — |
IMGVR_UViG_3300040783_000479 | nan | nan | — | — | — |
Supergroup011--narna-levi_soil_SRR5212865_k141_18325_flag1_multi12_len2772_5UTR_0 | Mitoviridae | nan | 807 | 976.8 | — |
Supergroup011--narna-levi_soil_SRR5211379_k141_17548_flag1_multi27_len2814_5UTR_0 | Mitoviridae | nan | 811 | 976.8 | — |
IMGVR_UViG_3300012387_000159 | nan | nan | — | — | — |
Supergroup011--narna-levi_soil_SRR5212535_k141_33131_flag1_multi33_len2837_5UTR_0 | Mitoviridae | nan | 813 | 975.3 | — |
Showing 8 sample rows of 31 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 31 members; the member table above shows only a sample. Dominant virus family: Mitoviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle