IREScentralIRESG189 · De novo family 189
GraphClust IRESGRoute A · GraphClust de novo69 members
De novo family 189 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300021346_000230 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300021304_000040 | Hypoviridae | nan | — | — | — |
Supergroup007--hypo_estuary_SRR7086280_k141_2753_flag1_multi83_len9521_5UTR_0 | nan | nan | 925 | 51.9 | — |
IMGVR_UViG_3300021337_000188 | Hypoviridae | nan | — | — | — |
IMGVR_UViG_3300021850_000181 | Hypoviridae | nan | — | — | — |
Supergroup015--picorna_salt_marsh_SRR11829001_k141_64028_flag1_multi56_len9991_5UTR_0 | Marnaviridae | nan | 1051 | 87.4 | — |
IMGVR_UViG_3300021304_000299 | Marnaviridae | nan | — | — | — |
Supergroup007--hypo_estuary_SRR7086626_k141_18393_flag1_multi17_len9445_5UTR_0 | nan | nan | 939 | 51.9 | — |
Showing 8 sample rows of 69 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 69 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle