IREScentralIRESG190 · De novo family 190
GraphClust IRESGRoute A · GraphClust de novo529 members
De novo family 190 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300012470_000010 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_marine_sediment_SRR6808589_k141_184398_flag1_multi51_len9670_5UTR_0 | Marnaviridae | nan | 1382 | 38 | — |
Supergroup015--picorna_estuary_SRR7086472_k141_18756_flag1_multi11_len6114_5UTR_0 | Marnaviridae | nan | 1104 | 38.6 | — |
IMGVR_UViG_3300036506_000047 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300035571_001102 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300035596_000808 | nan | nan | — | — | — |
IMGVR_UViG_3300019280_000058 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_marine_sediment_SRR6808581_k141_157073_flag1_multi2094_len9062_5UTR_0 | Marnaviridae | nan | 1244 | 1017.5 | — |
Showing 8 sample rows of 529 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 529 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle