IREScentralIRESG196 · De novo family 196
GraphClust IRESGRoute A · GraphClust de novo20 members
De novo family 196 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup011--narna-levi_soil_SRR5212869_k141_16151_flag1_multi14_len4086_5UTR_0 | Mitoviridae | Duamitovirus | 1563 | 608.5 | — |
Supergroup011--narna-levi_soil_SRR5212872_k141_39700_flag3_multi485_len4304_5UTR_0 | Mitoviridae | Duamitovirus | 1914 | 608.5 | — |
Supergroup011--narna-levi_soil_SRR5212073_k141_23312_flag1_multi22_len4118_5UTR_0 | Mitoviridae | Duamitovirus | 1589 | 608.5 | — |
Supergroup011--narna-levi_soil_SRR5818312_k141_50185_flag1_multi71_len4102_5UTR_0 | Mitoviridae | Duamitovirus | 1579 | 608.5 | — |
Supergroup011--narna-levi_soil_SRR5818378_k141_53455_flag1_multi101_len4126_5UTR_0 | Mitoviridae | Duamitovirus | 1592 | 608.5 | — |
Supergroup011--narna-levi_soil_SRR5819006_k141_60790_flag1_multi12_len4046_5UTR_0 | Mitoviridae | Duamitovirus | 1565 | 607 | — |
Supergroup011--narna-levi_soil_SRR5212868_k141_17197_flag1_multi9_len4086_5UTR_0 | Mitoviridae | Duamitovirus | 1568 | 608.5 | — |
Supergroup011--narna-levi_soil_SRR5818822_k141_14071_flag1_multi22_len4048_5UTR_0 | Mitoviridae | Duamitovirus | 1582 | 608.5 | — |
Showing 8 sample rows of 20 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 20 members; the member table above shows only a sample. Dominant virus family: Mitoviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle