IREScentralIRESG198 · De novo family 198
GraphClust IRESGRoute A · GraphClust de novo16 members
De novo family 198 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300036432_000033 | nan | nan | — | — | — |
IMGVR_UViG_3300036435_000055 | nan | nan | — | — | — |
IMGVR_UViG_3300036434_000079 | nan | nan | — | — | — |
IMGVR_UViG_3300036162_000045 | nan | nan | — | — | — |
IMGVR_UViG_3300036474_000044 | nan | nan | — | — | — |
Supergroup015--picorna_salt_marsh_SRR11829260_k141_39170_flag1_multi46_len8819_5UTR_0 | nan | nan | 977 | 624.5 | — |
IMGVR_UViG_3300036165_000054 | nan | nan | — | — | — |
Supergroup015--picorna_salt_marsh_SRR11828806_k141_64880_flag1_multi25_len6816_5UTR_0 | nan | nan | 983 | 624.5 | — |
Showing 8 sample rows of 16 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 16 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle