IREScentralIRESG200 · De novo family 200
GraphClust IRESGRoute A · GraphClust de novo26 members
De novo family 200 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_wetland_SRR12266273_k141_35521_flag1_multi20_len9203_5UTR_0 | Marnaviridae | Salisharnavirus | 836 | 994.8 | — |
Supergroup015--picorna_wetland_SRR12234193_k141_34962_flag1_multi45_len9391_5UTR_0 | Marnaviridae | nan | 844 | 994.8 | — |
Supergroup015--picorna_marine_sediment_SRR6808581_k141_107837_flag1_multi33_len9285_5UTR_0 | Marnaviridae | nan | 845 | 141.8 | — |
Supergroup015--picorna_wetland_SRR12265900_k141_71950_flag1_multi149_len7101_5UTR_0 | Marnaviridae | Salisharnavirus | 845 | 537.9 | — |
Supergroup015--picorna_wetland_SRR12266272_k141_30730_flag1_multi21_len7737_5UTR_0 | Marnaviridae | Salisharnavirus | 834 | 994.8 | — |
IMGVR_UViG_3300036125_000014 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300036179_000145 | nan | nan | — | — | — |
IMGVR_UViG_3300036124_000072 | nan | nan | — | — | — |
Showing 8 sample rows of 26 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 26 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle