IREScentralIRESG201 · De novo family 201
GraphClust IRESGRoute A · GraphClust de novo13 members
De novo family 201 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_marine_sediment_SRR3589016_k141_1720_flag1_multi634_len9764_5UTR_0 | Marnaviridae | nan | 1875 | 1014.8 | — |
Supergroup015--picorna_marine_sediment_SRR3589026_k141_1728_flag1_multi1678_len9790_5UTR_0 | Marnaviridae | Sogarnavirus | 1894 | 1014.8 | — |
Supergroup015--picorna_marine_sediment_SRR3589022_k119_1590_flag1_multi68_len6499_5UTR_0 | Marnaviridae | Sogarnavirus | 1865 | 1014.8 | — |
Supergroup015--picorna_marine_sediment_SRR3589012_k119_2537_flag1_multi475_len9756_5UTR_0 | Marnaviridae | nan | 1884 | 1014.8 | — |
Supergroup015--picorna_marine_sediment_SRR3589015_k141_1559_flag1_multi494_len9783_5UTR_0 | Marnaviridae | nan | 1888 | 1014.8 | — |
Supergroup015--picorna_marine_sediment_SRR3589017_k119_5134_flag1_multi1647_len9779_5UTR_0 | Marnaviridae | nan | 1873 | 1014.8 | — |
Supergroup015--picorna_marine_sediment_SRR3589020_k141_3112_flag1_multi102_len9770_5UTR_0 | Marnaviridae | Sogarnavirus | 1877 | 1014.8 | — |
Supergroup015--picorna_marine_sediment_SRR3589023_k141_1236_flag1_multi613_len8867_5UTR_0 | Marnaviridae | Sogarnavirus | 1895 | 1014.8 | — |
Showing 8 sample rows of 13 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 13 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle