IREScentralIRESG211 · De novo family 211
GraphClust IRESGRoute A · GraphClust de novo10 members
De novo family 211 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_marine_sediment_SRR6808583_k141_99998_flag1_multi28_len9373_5UTR_0 | Marnaviridae | nan | 1255 | 1026.3 | — |
Supergroup015--picorna_marine_sediment_SRR6808582_k141_117145_flag1_multi22748_len9507_5UTR_0 | Marnaviridae | nan | 1383 | 1026.3 | — |
Supergroup015--picorna_marine_sediment_SRR6808585_k141_88257_flag1_multi36_len9361_5UTR_0 | Marnaviridae | nan | 1243 | 1026.3 | — |
Supergroup015--picorna_marine_sediment_SRR6808592_k141_25742_flag1_multi14_len6059_5UTR_0 | Marnaviridae | nan | 1235 | 1026.3 | — |
Supergroup015--picorna_marine_sediment_SRR6808584_k141_93676_flag1_multi36_len9355_5UTR_0 | Marnaviridae | nan | 1237 | 1026.3 | — |
Supergroup015--picorna_marine_sediment_SRR6808581_k141_45750_flag1_multi100_len9292_5UTR_0 | Marnaviridae | nan | 1264 | 1026.3 | — |
Supergroup015--picorna_marine_sediment_SRR6808580_k141_54811_flag1_multi41210_len9444_5UTR_0 | Marnaviridae | nan | 1265 | 1026.3 | — |
Supergroup015--picorna_marine_sediment_SRR6808587_k141_153041_flag1_multi59903_len9386_5UTR_0 | Marnaviridae | nan | 1262 | 1026.3 | — |
Showing 8 sample rows of 10 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 10 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle