IREScentralIRESG216 · De novo family 216
GraphClust IRESGRoute A · GraphClust de novo42 members
De novo family 216 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_sediment_SRR11647877_k141_40005_flag1_multi96_len8867_5UTR_0 | Marnaviridae | nan | 828 | 990.3 | — |
IMGVR_UViG_3300035592_000012 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300022373_000008 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300036432_000084 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300037772_000029 | nan | nan | — | — | — |
Supergroup015--picorna_marine_sediment_SRR6808591_k141_132321_flag1_multi242_len8923_5UTR_0 | Marnaviridae | nan | 834 | 974.1 | — |
Supergroup015--picorna_marine_sediment_SRR6808584_k141_36084_flag1_multi295_len8881_5UTR_0 | Marnaviridae | nan | 842 | 974.1 | — |
Supergroup015--picorna_salt_marsh_SRR11827438_k141_26962_flag1_multi25_len7149_5UTR_0 | Marnaviridae | Salisharnavirus | 914 | 53.8 | — |
Showing 8 sample rows of 42 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 42 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle