IREScentralIRESG218 · De novo family 218
GraphClust IRESGRoute A · GraphClust de novo80 members
De novo family 218 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_estuary_SRR12391864_k141_37343_flag1_multi114_len9558_5UTR_0 | nan | nan | 790 | 609.2 | — |
Supergroup015--picorna_freshwater_SRR12063535_k141_2360_flag1_multi66_len7223_5UTR_0 | nan | nan | 664 | 48 | — |
IMGVR_UViG_3300037662_000256 | nan | nan | — | — | — |
Supergroup015--picorna_soil_SRR11450579_k141_3872_flag1_multi122_len8088_5UTR_0 | nan | nan | 467 | 95.7 | — |
Supergroup015--picorna_freshwater_SRR12063589_k141_5623_flag1_multi81_len8609_5UTR_0 | nan | nan | 592 | 44.7 | — |
IMGVR_UViG_3300037616_000206 | nan | nan | — | — | — |
IMGVR_UViG_3300037636_000132 | nan | nan | — | — | — |
IMGVR_UViG_3300037650_000196 | nan | nan | — | — | — |
Showing 8 sample rows of 80 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 80 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle