IREScentralIRESG228 · De novo family 228
GraphClust IRESGRoute A · GraphClust de novo15 members
De novo family 228 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_freshwater_SRR6049557_k141_85979_flag1_multi28_len8919_5UTR_0 | nan | nan | 1630 | 620.6 | — |
Supergroup015--picorna_freshwater_SRR6048939_k141_9763_flag1_multi28_len6780_5UTR_0 | nan | nan | 1627 | 621.2 | — |
Supergroup015--picorna_marine_sediment_SRR6808590_k141_43018_flag1_multi21_len5263_5UTR_0 | nan | nan | 936 | 73.2 | — |
Supergroup015--picorna_freshwater_sediment_SRR11005196_k141_22712_flag1_multi460_len8913_5UTR_0 | nan | nan | 1561 | 438.1 | — |
IMGVR_UViG_3300006362_000008 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_freshwater_SRR6049463_k141_155825_flag1_multi102_len8942_5UTR_0 | nan | nan | 1602 | 622.2 | — |
IMGVR_UViG_3300006602_000078 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300006384_000046 | Marnaviridae | nan | — | — | — |
Showing 8 sample rows of 15 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 15 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle