IREScentralIRESG234 · De novo family 234
GraphClust IRESGRoute A · GraphClust de novo21 members
De novo family 234 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_freshwater_SRR6049377_k141_35030_flag1_multi23_len8202_5UTR_0 | nan | nan | 661 | 824.1 | — |
IMGVR_UViG_3300038159_000100 | nan | nan | — | — | — |
IMGVR_UViG_3300037614_000394 | nan | nan | — | — | — |
Supergroup015--picorna_estuary_SRR12391176_k141_38186_flag1_multi103_len8276_5UTR_0 | nan | nan | 667 | 806.6 | — |
PQ054960.1_5UTR_0 | Dicistroviridae | nan | 555 | 72.2 | — |
Supergroup015--picorna_estuary_SRR12391256_k141_2021_flag1_multi114_len8218_5UTR_0 | nan | nan | 647 | 795.7 | — |
IMGVR_UViG_3300009755_000117 | Dicistroviridae | nan | — | — | — |
Supergroup015--picorna_estuary_SRR12391680_k141_25526_flag1_multi564_len8674_5UTR_0 | nan | nan | 1135 | 819 | — |
Showing 8 sample rows of 21 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 21 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle