IREScentralIRESG238 · De novo family 238
GraphClust IRESGRoute A · GraphClust de novo14 members
De novo family 238 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_salt_marsh_SRR6980496_k141_133581_flag1_multi27_len9068_5UTR_0 | Marnaviridae | nan | 1440 | 1007.2 | — |
Supergroup015--picorna_marine_SRR8820976_k119_43921_flag1_multi48_len9069_5UTR_0 | nan | nan | 1469 | 749.2 | — |
IMGVR_UViG_3300016732_000074 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_salt_marsh_SRR6980408_k141_54163_flag1_multi10_len8976_5UTR_0 | Marnaviridae | nan | 1434 | 1007.2 | — |
Supergroup015--picorna_salt_marsh_SRR6980412_k141_93577_flag1_multi8_len5627_5UTR_0 | Marnaviridae | nan | 1428 | 1007.2 | — |
Supergroup015--picorna_marine_SRR8821045_k99_65124_flag1_multi95_len9136_5UTR_0 | nan | nan | 1481 | 749.2 | — |
IMGVR_UViG_3300019271_000134 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_salt_marsh_SRR6980930_k141_170070_flag1_multi13_len9024_5UTR_0 | Marnaviridae | nan | 1436 | 1007.2 | — |
Showing 8 sample rows of 14 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 14 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle