IREScentralIRESG239 · De novo family 239
GraphClust IRESGRoute A · GraphClust de novo14 members
De novo family 239 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_act_sludge_SRR1027973_k119_22884_flag1_multi21_len8659_5UTR_0 | nan | nan | 902 | 609 | — |
Supergroup015--picorna_act_sludge_SRR1027977_k119_1132_flag1_multi19_len8694_5UTR_0 | nan | nan | 901 | 609 | — |
Supergroup015--picorna_act_sludge_SRR6032600_k141_19726_flag1_multi1120_len8870_5UTR_0 | Marnaviridae | nan | 1026 | 585.5 | — |
IMGVR_UViG_3300008884_000010 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_act_sludge_SRR1027978_k99_69437_flag1_multi29_len8648_5UTR_0 | nan | nan | 894 | 606.9 | — |
Supergroup015--picorna_act_sludge_SRR7976299_k141_25650_flag1_multi1584_len8850_5UTR_0 | Marnaviridae | nan | 874 | 556.2 | — |
Supergroup015--picorna_act_sludge_SRR6960549_k141_81141_flag1_multi1165_len8845_5UTR_0 | Marnaviridae | nan | 864 | 556.2 | — |
IMGVR_UViG_3300009295_000016 | Marnaviridae | nan | — | — | — |
Showing 8 sample rows of 14 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 14 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle