IREScentralIRESG242 · De novo family 242
GraphClust IRESGRoute A · GraphClust de novo20 members
De novo family 242 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300049080_000011 | nan | nan | — | — | — |
IMGVR_UViG_3300049089_000060 | nan | nan | — | — | — |
IMGVR_UViG_3300049079_000013 | nan | nan | — | — | — |
Supergroup015--picorna_marine_sediment_SRR6808579_k141_118462_flag1_multi2649_len9709_5UTR_0 | Marnaviridae | nan | 1010 | 785.5 | — |
ND_018780_5UTR_0 | Marnaviridae | nan | 1127 | 912.4 | — |
Supergroup015--picorna_marine_sediment_SRR6808588_k141_16658_flag1_multi4508_len9694_5UTR_0 | Marnaviridae | nan | 997 | 785.5 | — |
IMGVR_UViG_3300049468_000154 | nan | nan | — | — | — |
Supergroup015--picorna_marine_sediment_SRR6808587_k141_112990_flag1_multi2848_len9838_5UTR_0 | Marnaviridae | nan | 1130 | 785.5 | — |
Showing 8 sample rows of 20 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 20 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle