IREScentralIRESG249 · De novo family 249
GraphClust IRESGRoute A · GraphClust de novo41 members
De novo family 249 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
loading interactive viewer…
interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_freshwater_SRR12063594_k141_2730_flag1_multi40_len9337_5UTR_0 | Marnaviridae | nan | 885 | 604.8 | — |
Supergroup015--picorna_freshwater_SRR10080824_k99_65386_flag1_multi74_len8581_5UTR_0 | Marnaviridae | nan | 983 | 229.4 | — |
IMGVR_UViG_3300003698_000015 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_groundwater_SRR5246516_k141_36493_flag1_multi42_len9146_5UTR_0 | Marnaviridae | nan | 706 | 538.3 | — |
Supergroup015--picorna_freshwater_SRR12063613_k141_8381_flag1_multi580_len6127_5UTR_0 | Marnaviridae | nan | 892 | 610.5 | — |
Supergroup015--picorna_groundwater_SRR5246521_k141_20773_flag1_multi114_len9266_5UTR_0 | Marnaviridae | nan | 826 | 164.4 | — |
IMGVR_UViG_3300003698_000037 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300003696_000008 | Marnaviridae | nan | — | — | — |
Showing 8 sample rows of 41 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 41 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle