IREScentralIRESG250 · De novo family 250
GraphClust IRESGRoute A · GraphClust de novo104 members
De novo family 250 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_seawater_SRR8866498_k141_66150_flag1_multi138_len9353_5UTR_0 | Marnaviridae | nan | 1349 | 1006.8 | — |
Supergroup015--picorna_freshwater_SRR6049463_k141_198768_flag1_multi279_len8888_5UTR_0 | nan | nan | 1957 | 1009.7 | — |
IMGVR_UViG_3300006356_000032 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_marine_SRR8490976_k141_431757_flag1_multi1864_len8904_5UTR_0 | nan | nan | 1953 | 937.8 | — |
Supergroup015--picorna_salt_marsh_SRR11829261_k141_21403_flag1_multi24_len7388_5UTR_0 | nan | nan | 1586 | 119.9 | — |
Supergroup015--picorna_marine_ERR3586687_k119_127005_flag1_multi163_len7736_5UTR_0 | Marnaviridae | nan | 1246 | 975.3 | — |
201MES1GGZZ13_1_k119_200600_122270 | unknown | unknown | 800 | 1006.8 | — |
IMGVR_UViG_3300049468_000671 | nan | nan | — | — | — |
Showing 8 sample rows of 104 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 104 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle