IREScentralIRESG254 · De novo family 254
GraphClust IRESGRoute A · GraphClust de novo17 members
De novo family 254 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300022373_000028 | Dicistroviridae | nan | — | — | — |
Supergroup015--picorna_estuary_SRR7094501_k141_44815_flag1_multi10_len5938_5UTR_0 | nan | nan | 475 | 582.2 | — |
IMGVR_UViG_3300021346_000418 | Dicistroviridae | nan | — | — | — |
Supergroup015--picorna_estuary_SRR7086281_k141_15561_flag1_multi12_len6976_5UTR_0 | nan | nan | 504 | 624.8 | — |
Supergroup015--picorna_estuary_SRR7086167_k141_17090_flag1_multi15_len8608_5UTR_0 | nan | nan | 500 | 624.8 | — |
Supergroup015--picorna_estuary_SRR7086411_k141_19580_flag1_multi25_len9217_5UTR_0 | Dicistroviridae | nan | 534 | 612.1 | — |
ND_170091_5UTR_0 | Dicistroviridae | nan | 569 | 624.8 | — |
Supergroup015--picorna_estuary_SRR7086360_k141_20518_flag1_multi20_len9179_5UTR_0 | Dicistroviridae | nan | 500 | 616.8 | — |
Showing 8 sample rows of 17 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 17 members; the member table above shows only a sample. Dominant virus family: Dicistroviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle