IREScentralIRESG259 · De novo family 259
GraphClust IRESGRoute A · GraphClust de novo47 members
De novo family 259 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_wetland_SRR12235400_k141_38163_flag1_multi122_len6922_5UTR_0 | nan | nan | 922 | 616.2 | — |
Supergroup015--picorna_wetland_SRR12232906_k141_55462_flag1_multi557_len8450_5UTR_0 | nan | nan | 907 | 616 | — |
IMGVR_UViG_3300010144_000999 | Dicistroviridae | nan | — | — | — |
IMGVR_UViG_3300038282_000194 | Dicistroviridae | nan | — | — | — |
Supergroup015--picorna_wetland_SRR12232908_k141_43969_flag0_multi1733_len6960_5UTR_0 | nan | nan | 960 | 616 | — |
IMGVR_UViG_3300038154_000089 | Dicistroviridae | nan | — | — | — |
IMGVR_UViG_3300037733_000410 | Dicistroviridae | nan | — | — | — |
IMGVR_UViG_3300037623_000169 | Dicistroviridae | nan | — | — | — |
Showing 8 sample rows of 47 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 47 members; the member table above shows only a sample. Dominant virus family: Dicistroviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle