IREScentralIRESG269 · De novo family 269
GraphClust IRESGRoute A · GraphClust de novo57 members
De novo family 269 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup031--Clstr018_houxin_aquatic_W5-SZ_k141_306598_flag1_multi9_len5131_5UTR_0 | nan | nan | 609 | 24.6 | — |
IMGVR_UViG_3300012725_000036 | nan | nan | — | — | — |
Supergroup031--Clstr018_riverine_SRR7687204_k141_85395_flag1_multi19_len4643_5UTR_0 | nan | nan | 426 | 548.8 | — |
IMGVR_UViG_3300016699_000082 | nan | nan | — | — | — |
IMGVR_UViG_3300028112_000083 | nan | nan | — | — | — |
Supergroup031--Clstr018_houxin_aquatic_W4-SZ_k141_35814_flag1_multi6_len5117_5UTR_0 | nan | nan | 605 | 32.2 | — |
IMGVR_UViG_3300012962_000277 | nan | nan | — | — | — |
Supergroup031--Clstr018_riverine_SRR7687292_k141_169627_flag1_multi23_len4627_5UTR_0 | nan | nan | 443 | 557.6 | — |
Showing 8 sample rows of 57 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 57 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle