IREScentralIRESG280 · De novo family 280
GraphClust IRESGRoute A · GraphClust de novo39 members
De novo family 280 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300029680_000002 | nan | nan | — | — | — |
Supergroup015--picorna_marine_sediment_SRR3589030_k119_1843_flag1_multi17_len8623_5UTR_0 | nan | nan | 999 | 551.2 | — |
Supergroup015--picorna_sediment_SRR11647991_k141_52222_flag1_multi11_len5368_5UTR_0 | nan | nan | 891 | 475.1 | — |
IMGVR_UViG_3300028620_000128 | nan | nan | — | — | — |
IMGVR_UViG_3300035574_000480 | nan | nan | — | — | — |
Supergroup015--picorna_lake_water_SRR8536096_k141_51536_flag1_multi82_len8947_5UTR_0 | nan | nan | 888 | 559.4 | — |
Supergroup015--picorna_marine_sediment_SRR3589015_k141_2130_flag1_multi18_len6542_5UTR_0 | nan | nan | 994 | 552.2 | — |
Supergroup015--picorna_freshwater_SRR8512518_k99_80727_flag1_multi679_len9015_5UTR_0 | nan | nan | 908 | 555.1 | — |
Showing 8 sample rows of 39 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 39 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle