IREScentralIRESG281 · De novo family 281
GraphClust IRESGRoute A · GraphClust de novo65 members
De novo family 281 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_sediment_SRR11648205_k141_36139_flag1_multi15_len7047_5UTR_0 | Marnaviridae | nan | 809 | 989 | — |
ND_288706_5UTR_0 | Marnaviridae | nan | 950 | 993.1 | — |
Supergroup015--picorna_freshwater_sediment_SRR11005197_k141_145285_flag1_multi60_len9169_5UTR_0 | Marnaviridae | nan | 948 | 45.2 | — |
IMGVR_UViG_3300036506_000258 | Marnaviridae | nan | — | — | — |
IMGVR_UViG_3300037766_000052 | nan | nan | — | — | — |
Supergroup015--picorna_hypersaline_lake_SRR5256710_k141_178280_flag1_multi14_len6070_5UTR_0 | nan | nan | 1053 | -4.3 | — |
ND_285292_5UTR_0 | Marnaviridae | nan | 934 | 972.2 | — |
ND_427975_5UTR_0 | Marnaviridae | nan | 780 | 537.3 | — |
Showing 8 sample rows of 65 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 65 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle