IREScentralIRESG282 · De novo family 282
GraphClust IRESGRoute A · GraphClust de novo40 members
De novo family 282 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup064--Clstr251_lake_water_SRR5834261_k141_57483_flag1_multi22_len5433_5UTR_0 | nan | nan | 336 | 385.8 | — |
Supergroup064--Clstr251_lake_water_SRR5834030_k141_2916_flag1_multi26_len5426_5UTR_0 | nan | nan | 326 | 359.6 | — |
ND_330596_5UTR_0 | f.0145 | nan | 458 | 385 | — |
ND_329024_5UTR_0 | f.0145 | nan | 428 | 303 | — |
IMGVR_UViG_3300012699_000504 | nan | nan | — | — | — |
IMGVR_UViG_3300012686_000447 | nan | nan | — | — | — |
IMGVR_UViG_3300016687_000020 | nan | nan | — | — | — |
ND_330979_5UTR_0 | f.0145 | nan | 458 | 385.8 | — |
Showing 8 sample rows of 40 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 40 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle