IREScentralIRESG286 · De novo family 286
GraphClust IRESGRoute A · GraphClust de novo13 members
De novo family 286 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300020077_000198 | Dicistroviridae | nan | — | — | — |
IMGVR_UViG_3300020081_000793 | Dicistroviridae | nan | — | — | — |
Supergroup015--picorna_rhizosphere_SRR7142037_k141_203617_flag1_multi82_len8580_5UTR_0 | nan | nan | 518 | 588 | — |
Supergroup015--picorna_rhizosphere_SRR7142026_k141_18763_flag1_multi38_len8598_5UTR_0 | nan | nan | 545 | 674.9 | — |
IMGVR_UViG_3300020610_000039 | Dicistroviridae | nan | — | — | — |
Supergroup015--picorna_rhizosphere_SRR8100032_k141_331570_flag1_multi85_len8612_5UTR_0 | nan | nan | 549 | 697.3 | — |
IMGVR_UViG_3300020078_000082 | Dicistroviridae | nan | — | — | — |
IMGVR_UViG_3300020070_000426 | Dicistroviridae | nan | — | — | — |
Showing 8 sample rows of 13 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 13 members; the member table above shows only a sample. Dominant virus family: Dicistroviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle