IREScentralIRESG288 · De novo family 288
GraphClust IRESGRoute A · GraphClust de novo20 members
De novo family 288 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup031--Clstr039_riverine_SRR7963493_k141_20754_flag1_multi40_len5246_5UTR_0 | Circoviridae | Circovirus | 325 | 402.2 | — |
Supergroup031--Clstr039_riverine_SRR7963562_k141_141971_flag1_multi53_len5371_5UTR_0 | Circoviridae | Circovirus | 390 | 402.2 | — |
Supergroup031--Clstr039_riverine_SRR8438307_k141_138395_flag1_multi20_len5222_5UTR_0 | Circoviridae | Circovirus | 299 | 341.4 | — |
IMGVR_UViG_3300028286_000013 | nan | nan | — | — | — |
IMGVR_UViG_3300026570_000085 | nan | nan | — | — | — |
IMGVR_UViG_3300024556_000082 | nan | nan | — | — | — |
Supergroup031--Clstr039_riverine_SRR7963561_k141_16792_flag1_multi18_len5273_5UTR_0 | Circoviridae | Circovirus | 339 | 394.6 | — |
Supergroup031--Clstr039_riverine_SRR7687292_k141_26017_flag1_multi25_len5246_5UTR_0 | Circoviridae | Circovirus | 323 | 402.2 | — |
Showing 8 sample rows of 20 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 20 members; the member table above shows only a sample. Dominant virus family: Circoviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle