IREScentralIRESG289 · De novo family 289
GraphClust IRESGRoute A · GraphClust de novo30 members
De novo family 289 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_freshwater_SRR6048562_k141_171309_flag1_multi28_len10132_5UTR_0 | nan | nan | 581 | 628.6 | — |
Supergroup015--picorna_aquatic_SRR5830085_k141_19090_flag1_multi254_len10159_5UTR_0 | Marnaviridae | nan | 626 | 714.3 | — |
Supergroup015--picorna_houxin_aquatic_W13-DG_k141_35389_flag1_multi114_len10235_5UTR_0 | Marnaviridae | nan | 824 | 203.9 | — |
IMGVR_UViG_3300038288_000759 | nan | nan | — | — | — |
MW347539.1_5UTR_0 | nan | nan | 782 | 336.9 | — |
Supergroup015--picorna_estuary_SRR12391171_k141_20632_flag1_multi21_len10156_5UTR_0 | nan | nan | 646 | 779.1 | — |
IMGVR_UViG_3300012471_000266 | nan | nan | — | — | — |
Supergroup015--picorna_houxin_soil_S52-HZ_k141_34758_flag1_multi621_len10237_5UTR_0 | Marnaviridae | nan | 626 | 739.9 | — |
Showing 8 sample rows of 30 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 30 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle