IREScentralIRESG290 · De novo family 290
GraphClust IRESGRoute A · GraphClust de novo13 members
De novo family 290 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup018--Clstr081_aquatic_ERR2635177_k141_9166_flag1_multi45_len6195_5UTR_0 | nan | nan | 791 | 982.8 | — |
Supergroup018--Clstr081_aquatic_ERR2635169_k141_5978_flag1_multi51_len6209_5UTR_0 | nan | nan | 784 | 962.5 | — |
Supergroup018--Clstr081_aquatic_ERR2635178_k141_10244_flag1_multi87_len6169_5UTR_0 | nan | nan | 749 | 905.2 | — |
Supergroup018--Clstr081_aquatic_ERR2635181_k141_7007_flag1_multi90_len6278_5UTR_0 | nan | nan | 841 | 1021.1 | — |
Supergroup018--Clstr081_aquatic_ERR2635180_k141_12936_flag1_multi131_len6263_5UTR_0 | nan | nan | 838 | 1021.1 | — |
Supergroup018--Clstr081_aquatic_ERR2635173_k141_9673_flag1_multi171_len6249_5UTR_0 | nan | nan | 824 | 1021.1 | — |
Supergroup018--Clstr081_aquatic_ERR2635172_k141_13173_flag1_multi82_len6262_5UTR_0 | nan | nan | 837 | 1021.1 | — |
Supergroup018--Clstr081_aquatic_ERR2635168_k141_2399_flag1_multi54_len6170_5UTR_0 | nan | nan | 766 | 923.9 | — |
Showing 8 sample rows of 13 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 13 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle