IREScentralIRESG299 · De novo family 299
GraphClust IRESGRoute A · GraphClust de novo19 members
De novo family 299 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_soil_SRR5252352_k141_116235_flag1_multi14_len9184_5UTR_0 | nan | nan | 963 | 619 | — |
Supergroup015--picorna_soil_SRR6223543_k141_100483_flag1_multi16_len8041_5UTR_0 | nan | nan | 998 | 612.6 | — |
Supergroup015--picorna_soil_SRR5252349_k141_202642_flag1_multi11_len9265_5UTR_0 | nan | nan | 964 | 612.6 | — |
Supergroup015--picorna_soil_SRR5260220_k141_7413_flag1_multi565_len9340_5UTR_0 | nan | nan | 1021 | 612.6 | — |
Supergroup015--picorna_soil_SRR5258559_k141_57832_flag1_multi23_len9302_5UTR_0 | nan | nan | 999 | 614.6 | — |
IMGVR_UViG_3300003163_000164 | Dicistroviridae | nan | — | — | — |
Supergroup015--picorna_soil_SRR5258656_k141_125370_flag1_multi11_len7439_5UTR_0 | nan | nan | 976 | 616.9 | — |
MN036276.1_5UTR_0 | nan | nan | 1001 | 612.6 | — |
Showing 8 sample rows of 19 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 19 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle