IREScentralIRESG309 · De novo family 309
GraphClust IRESGRoute A · GraphClust de novo25 members
De novo family 309 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300024546_000196 | nan | nan | — | — | — |
IMGVR_UViG_3300028101_000160 | nan | nan | — | — | — |
IMGVR_UViG_3300024852_000013 | nan | nan | — | — | — |
IMGVR_UViG_3300026409_000018 | nan | nan | — | — | — |
Supergroup031--Clstr035_riverine_SRR7687307_k141_93247_flag1_multi9_len6576_5UTR_0 | nan | nan | 1475 | 1010.9 | — |
Supergroup031--Clstr035_wastewater_SRR8840714_k141_49994_flag1_multi99_len6222_5UTR_0 | nan | nan | 1181 | 26 | — |
Supergroup031--Clstr035_freshwater_SRR1601413_k119_28945_flag1_multi14_len6072_5UTR_0 | nan | nan | 979 | 573.5 | — |
IMGVR_UViG_3300028100_000054 | nan | nan | — | — | — |
Showing 8 sample rows of 25 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 25 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle