IREScentralIRESG310 · De novo family 310
GraphClust IRESGRoute A · GraphClust de novo18 members
De novo family 310 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300012693_000250 | nan | nan | — | — | — |
Supergroup031--Clstr083_freshwater_sediment_SRR7080627_k141_21826_flag1_multi29_len5094_5UTR_0 | nan | nan | 470 | 31.6 | — |
IMGVR_UViG_3300012695_000088 | nan | nan | — | — | — |
IMGVR_UViG_3300012697_000433 | nan | nan | — | — | — |
Supergroup031--Clstr095_freshwater_SRR12063590_k141_3080_flag1_multi42_len4932_5UTR_0 | nan | nan | 501 | 57.8 | — |
IMGVR_UViG_3300012700_000163 | nan | nan | — | — | — |
Supergroup031--Clstr091_soil_SRR5215306_k141_261857_flag1_multi24_len5210_5UTR_0 | nan | nan | 637 | 49.8 | — |
Supergroup031--Clstr025_houxin_aquatic_W5-SZ_k141_27317_flag1_multi413_len5007_5UTR_0 | nan | nan | 474 | 75.2 | — |
Showing 8 sample rows of 18 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 18 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle