IREScentralIRESG318 · De novo family 318
GraphClust IRESGRoute A · GraphClust de novo154 members
De novo family 318 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300016762_000011 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_houxin_aquatic_W33-SH_k141_117293_flag1_multi146_len9113_IGR_0 | Marnaviridae | Kusarnavirus | 481 | 77.4 | — |
Supergroup015--picorna_marine_sediment_SRR6808579_k141_124386_flag1_multi81_len5553_IGR_0 | Marnaviridae | Kusarnavirus | 471 | 183.2 | — |
IMGVR_UViG_3300036106_000058 | Marnaviridae | nan | — | — | — |
ND_019074_IGR_0 | Marnaviridae | nan | 480 | 81 | — |
IMGVR_UViG_3300033528_000012 | Marnaviridae | nan | — | — | — |
Supergroup015--picorna_marine_SRR6401741_k141_24557_flag1_multi1405_len8903_IGR_0 | Marnaviridae | Kusarnavirus | 465 | 184.8 | — |
IMGVR_UViG_3300016726_000062 | Marnaviridae | nan | — | — | — |
Showing 8 sample rows of 154 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 154 members; the member table above shows only a sample. Dominant virus family: Marnaviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle